I think I may replace the intake manifold completely. Where is the upper intake gasket? And I think as far as port you are talking about is it this one?
I think you could figure this bitch out. We can help. You gotta tell us when it stores the misfire fault. Even if you can't feel it misfire, you know when the light comes on or starts flashing. So when do you think it drops the cylinder? Cold start/ driving before fully warm? Heavy load or at idle? Answer those questions and we can start to help. I'm never very confident in independent shops trying to fix these trucks. Sure there are some great ones out there. The chances of you finding one by accident are slim to none. Slim just left.