For the MS, I would strongly suggest you get onto the boards.
First there are alot of knowledgable people around to help.
Second, get a sample map from someone who is running a similar setup.
Now, for MS start with the least amount of variables. Most of the LR boys who are Squirted have stock sensors and injectors. This helps alot in establishing a baseline for your tuning.
I would just get them tested and also DO check if they are low impedance.. This has an impact on the MS box and you may require a flyback board.
The best I have seen is stock, remove the MAF and run the fuel map form a similar engine.
Do NOT try and handle ignition right away. Get the fuel map right first, then look at going with a wide band O2 sensor, this will really help fine tune that feul map.
Once all is running well, look at an EDIS igntion or see if you can put your hands on a Disco coil pack, though you will need a toothed flywheel and an opti sensor to trigger the spark. But these are just the best. Its a waste spark system and works very well with MSII.
All in all be patient and it will work out. Do be diligent when handling fuel maps and do not change too many things so that you can back out of any situation.
BTW MS will control any type of injectors. It controls the duration of the injector open time and when the bank will cycle. MS does NOT control individual injectors yet
Another thing is and this is important. The wiring !!!!!! Make sure all the wires and connecters especially those pesky connectors are in good shape. I would redo a short loom, but thats up to you.
Again for the injectors get them checked, its cheap and will give you peace of mind.
Though if I yank them out I would want to replace the O ring ..
TG