Could just be that #3 even with the leak is still firing enough not to throw a code but it may leak just enough that #4 is getting extra air mixed with residual fuel through the intake. Since the firing order is 1,8,4,3 and being side by side this makes sense. I know when my cam had a few bad lobes it would cause misfires with holes that the cam was fine on.
You might just try running sea foam through your intake and in the gas for a few weeks.
when you say 3+4 are next to each other, how do you mean?