At this point...
I got the wiring set up in the only logical way that makes sense with that isolator, so then I looked at the battery voltage and decided to switch the main with the aux because they were both taking a charge while running, but the main was weaker than the aux, so I figured maybe I could get it to run better that way......
Not good enough, but... more than that, the little yellow wire that comes out of the firewall started smoking. I also got an error alarm from my converter that is plugged into the cig lighter. I got a little bit of smoke in the cabin, and I could see where it was coming out in the engine bay.
Anyway, I pulled the plastic off the wire and noticed that between the firewall and and the isolator that wire has two or three splices in it! It comes out of the firewall as two blue and black wires, it is then spliced into one yellow wire that was attached to the isolator. In my tests I confirmed that when I start the car without that wire connected, the voltage stays low, but when I connect it the alternator starts charging.
So, even if I do go to single battery, I still need that wire; and based on the smoke, I bet there is another stupid splice someplace under the dash.
HELP! Does anyone know where that yellow wire (blue and black) go when they get past the firewall?