The FSM can't cover ever technique that a qualified technician might employ.
W/R/T tapping, please use a rethread tap and not a thread-cutting tap. A thread-cutting tap CUTS material whereas a rethread tap gently pushes the material back where it belongs without changing the thread fit. Continuously running a tap through a previously tapped hole will enlarge the hole and negatively impact the thread fit quality.
The head bolt tightening technique was devised by guys whose job was to develop a method that could be employed by minimally qualified assemblers well enough for the engine to last through the warranty period. Their primary goals were ease of assembly and longevity.
As for studs, I'm afraid there are an awful lot of folks who do not install them correctly, don't torwue them correctly, don't retorque correctly, don't retorque periodically, and are using them in an application where they are poorly suited. I ONLY use them on supercharged or other high-performance Rover engines (yes, there are such animals!).
While I don't allow myself to be under pressure to finish jobs under a particular timeframe, there have been an awful lot of headjobs done on these trucks using some techniques I don't suggest, under flat-rate conditions and those trucks run for a damn long time!
I love these silly engines and I really do think they're pretty damn elegant and capable of producing tremendous amounts of power for long periods of time. I will admit it does cost more to make a LOT of power with the RV8, but when you're finished, they're fantastic and some are even Schramtastic!